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Phylogenetic Analysis for 2019-NCoV

Data source:

Sampele_Name Query_ID[1] Completeness
BetaCoV/Wuhan/IPBCAMS-WH-01/2019 GWHABKF00000000 Complete
BetaCoV/Wuhan/IPBCAMS-WH-02/2019 GWHABKG00000000 Complete
BetaCoV/Wuhan/IPBCAMS-WH-03/2019 GWHABKH00000000 Complete
BetaCoV/Wuhan/IPBCAMS-WH-04/2019 GWHABKI00000000 Complete
BetaCoV/Wuhan/IPBCAMS-WH-05/2020 GWHABKJ00000000 Complete
WIV02 GWHABKK00000000 Complete
WIV04 GWHABKL00000000 Complete
WIV05 GWHABKM00000000 Complete
WIV06 GWHABKN00000000 Complete
WIV07 GWHABKO00000000 Complete
TG13 GWHABKP00000000 Complete
Wuhan-Hu-1 MN908947 Complete
2019-nCoV_HKU-SZ-002a_2020 MN938384 Complete
2019-nCoV_HKU-SZ-005b_2020 MN975262 Complete
2019-nCoV/USA-WA1/2020 MN985325 Complete
2019-nCoV WHU01 MN988668 Complete
2019-nCoV WHU02 MN988669 Complete
2019-nCoV/USA-IL1/2020 MN988713 Complete
2019-nCoV/USA-CA1/2020 MN994467 Complete
2019-nCoV/USA-CA2/2020 MN994468 Complete
2019-nCoV/USA-AZ1/2020 MN997409 Complete
BetaCoV/Australia/VIC01/2020 MT007544 Complete
BetaCoV/Wuhan/WH-01/2019 NMDC60013002-01 Complete
BetaCoV/Wuhan/WH-03/2019 NMDC60013002-03 Complete
BetaCoV/Wuhan/WH-04/2019 NMDC60013002-04 Complete
BetaCoV/Wuhan/WH19002/2019 NMDC60013002-05 Complete
BetaCoV/Wuhan/WH19008/2019  NMDC60013002-06 Complete
BetaCoV/Wuhan/YS8011/2020 NMDC60013002-07 Complete
BetaCoV/Wuhan/WH19001/2019 NMDC60013002-08 Complete
BetaCoV/Wuhan/WH19004/2020 NMDC60013002-09 Complete
BetaCoV/Wuhan/WH19005/2019 NMDC60013002-10 Complete
2019-nCoV_HKU-SZ-001_2020 MN938385 Partial/gene level
2019-nCoV_HKU-SZ-004_2020 MN938386 Partial/gene level
2019-nCoV_HKU-SZ-001_2020 MN938387 Partial/gene level
2019-nCoV_HKU-SZ-002b_2020 MN938388 Partial/gene level
2019-nCoV_HKU-SZ-004_2020 MN938389 Partial/gene level
2019-nCoV_HKU-SZ-005_2020 MN938390 Partial/gene level
SI200040-SP MN970003 Partial/gene level
SI200121-SP MN970004 Partial/gene level
2019-nCoV_HKU-SZ-007a_2020 MN975263 Partial/gene level
2019-nCoV_HKU-SZ-007b_2020 MN975264 Partial/gene level
2019-nCoV_HKU-SZ-007c_2020 MN975265 Partial/gene level
2019-nCoV_HKU-SZ-007a_2020 MN975266 Partial/gene level
2019-nCoV_HKU-SZ-007b_2020 MN975267 Partial/gene level
2019-nCoV_HKU-SZ-007c_2020 MN975268 Partial/gene level
2019 nCoV/Italy-INMI1 MT008022 Partial/gene level
2019 nCoV/Italy-INMI2 MT008023 Partial/gene level
BetaCoV/Wuhan/WH-02/2019 NMDC60013002-02 Partial/scaffold level
  • [1]: With download link, click for downlaod fasta file.
  • [2]: GISAID data is not public available.

Last modified on 2020-01-30