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Workflow Setup and Run

Workflow

Framework (Tools)

  • Snakemake
  • WDL
  • nextflow
  • CWL
  • Martian (Pipeline Manager developed by 10x Genomics for Cellranger)
  • make (GNU)

Comparision

There are two types of workflow system.

  • backward (pull) (output -> input) eg, make, snakemake

  • forward (push) (input -> output) eg, nextflow, SciPipe


Last modified on 2020-02-21