Workflow

Framework (Tools)

• Snakemake
• WDL
• nextflow
• CWL
• Martian (Pipeline Manager developed by 10x Genomics for Cellranger)
• make (GNU)

Comparision

There are two types of workflow system.

• backward (pull) (output -> input) eg, make, snakemake

• forward (push) (input -> output) eg, nextflow, SciPipe

Last modified on 2023-11-01